BiCOB 2019: Author Index

Author	Papers
A
Akhter, Nasrin	Connecting Molecular Energy Landscape Analysis with Markov Model-based Analysis of Equilibrium Structural Dynamics
Aldarwish, Hassan	Identifying DNA Sequence Motifs of Pdx-1 and NeuroD1 Transcription Factors
Aldwairi, Tamer	Prediction Of Novel Pirna Rat Clusters Based On Mouse Pirna Clusters Using Downstream and Upstream Analysis
Alkhamis, Mohammad	gcn.MOPS: Accelerating cn.MOPS with GPU
Arandjelovic, Ognjen	Colorectal Cancer Outcome Prediction from H&E Whole Slide Images using Machine Learning and Automatically Inferred Phenotype Profiles
B
Baniasadi, Amirali	gcn.MOPS: Accelerating cn.MOPS with GPU
Bodendorf, Freimut	Predicting high-cost patients by Machine Learning: A case study in an Australian private hospital group
Britt, Adrian	Statistical Analysis of GLCM Texture Features and Microstructures in SEM Images of Crassostrea virginica Exposed to Atrazine
Brook, Glenn	HPC-BLAST: Distributed BLAST for Modern HPC Clusters.
Bryant, Bobby	Robust Fuzzy Cluster Ensemble on Cancer Gene Expression Data
Burdyshaw, Chad	HPC-BLAST: Distributed BLAST for Modern HPC Clusters.
C
Caie, Peter	Colorectal Cancer Outcome Prediction from H&E Whole Slide Images using Machine Learning and Automatically Inferred Phenotype Profiles
Chun, Fang	Prediction of MoRFs Based on n-gram Convolutional Neural Network
Clark, Patricia	A New Look at Codon Usage and Protein Expression
Clement, Mark	The Polygraph: A Data Structure for Genome Alignment and Variation Detection
Costa, Evaldo	DALIGNER Performance Evaluation on Intel Xeon Phi Architecture
D
Dimitriou, Neofytos	Colorectal Cancer Outcome Prediction from H&E Whole Slide Images using Machine Learning and Automatically Inferred Phenotype Profiles
Donovan, Grace	Statistical Analysis of GLCM Texture Features and Microstructures in SEM Images of Crassostrea virginica Exposed to Atrazine
E
Eigner, Isabella	Predicting high-cost patients by Machine Learning: A case study in an Australian private hospital group
Elias, Elias	An Enrichment Method For Mapping Ambiguous Reads To Reference Genome For NGS Analysis
Emrich, Scott	A New Look at Codon Usage and Protein Expression
F
Formanowicz, Dorota	Petri nets and ODE as complementary tools in analysis of signaling pathways
Formanowicz, Piotr	Petri nets and ODE as complementary tools in analysis of signaling pathways
Fujimoto, Masaki	The Polygraph: A Data Structure for Genome Alignment and Variation Detection
G
Gao, Shanshan	Understand Effective Coverage by Mapped Reads using Genome Repeat Complexity
Gutowska, Kaja	Petri nets and ODE as complementary tools in analysis of signaling pathways
H
Harris, Elena	Identifying DNA Sequence Motifs of Pdx-1 and NeuroD1 Transcription Factors
Harris Jr, Frederick C.	Robust Fuzzy Cluster Ensemble on Cancer Gene Expression Data
Harrison, David	Colorectal Cancer Outcome Prediction from H&E Whole Slide Images using Machine Learning and Automatically Inferred Phenotype Profiles
Hoffmann, Federico	Prediction Of Novel Pirna Rat Clusters Based On Mouse Pirna Clusters Using Downstream and Upstream Analysis
Horton, Mitchel	HPC-BLAST: Distributed BLAST for Modern HPC Clusters.
K
Kabir, Kazi Lutful	Connecting Molecular Energy Landscape Analysis with Markov Model-based Analysis of Equilibrium Structural Dynamics
Keller, David	Identifying DNA Sequence Motifs of Pdx-1 and NeuroD1 Transcription Factors
Khan, Abia	Statistical Analysis of GLCM Texture Features and Microstructures in SEM Images of Crassostrea virginica Exposed to Atrazine
Kogut, Daria	Petri nets and ODE as complementary tools in analysis of signaling pathways
L
Li, Caihong	Prediction of MoRFs Based on n-gram Convolutional Neural Network
Li, Xuehui	An Enrichment Method For Mapping Ambiguous Reads To Reference Genome For NGS Analysis
Liang, Zifeng	Comparison of Type I Interferon Expression in Adult and Neonatal Mice during Respiratory Viral Infection
Liu, Yuan	An Enrichment Method For Mapping Ambiguous Reads To Reference Genome For NGS Analysis
Lyman, Cole	The Polygraph: A Data Structure for Genome Alignment and Variation Detection
M
Ma, Yongchao	An Enrichment Method For Mapping Ambiguous Reads To Reference Genome For NGS Analysis
Manthey, Frank	An Enrichment Method For Mapping Ambiguous Reads To Reference Genome For NGS Analysis
McSweeney, Benjamin	Statistical Analysis of GLCM Texture Features and Microstructures in SEM Images of Crassostrea virginica Exposed to Atrazine
Meedeniya, Dulani	A SVM Model for Candidate Y-chromosome Gene Discovery in Prostate Cancer
Moriwaki, Yoshitaka	Prediction of MoRFs Based on n-gram Convolutional Neural Network
N
Nguyen, Tin	Robust Fuzzy Cluster Ensemble on Cancer Gene Expression Data
P
Perera, Indika	A SVM Model for Candidate Y-chromosome Gene Discovery in Prostate Cancer
Perkins, Andy	Prediction Of Novel Pirna Rat Clusters Based On Mouse Pirna Clusters Using Downstream and Upstream Analysis
Phan, Vinhthuy	Understand Effective Coverage by Mapped Reads using Genome Repeat Complexity
Poterała-Hejmo, Aleksandra	Petri nets and ODE as complementary tools in analysis of signaling pathways
R
Rajapaksa, Sandun	A SVM Model for Candidate Y-chromosome Gene Discovery in Prostate Cancer
Rasanjana, Wageesha	A SVM Model for Candidate Y-chromosome Gene Discovery in Prostate Cancer
Rekapalli, Bhanu	HPC-BLAST: Distributed BLAST for Modern HPC Clusters.
Rodriguez, Anabel	A New Look at Codon Usage and Protein Expression
Rossetto, Allison	Improving Classification with CNNs using Wavelet Pooling with Nesterov-Accelerated Adam
S
Salsman, Evan	An Enrichment Method For Mapping Ambiguous Reads To Reference Genome For NGS Analysis
Santos, Nicolette	Statistical Analysis of GLCM Texture Features and Microstructures in SEM Images of Crassostrea virginica Exposed to Atrazine
Sawyer, Shane	HPC-BLAST: Distributed BLAST for Modern HPC Clusters.
Scully, Tara	Statistical Analysis of GLCM Texture Features and Microstructures in SEM Images of Crassostrea virginica Exposed to Atrazine
Shehu, Amarda	Equipping Decoy Generation Algorithms for Template-free Protein Structure Prediction with Maps of the Protein Conformation Space Connecting Molecular Energy Landscape Analysis with Markov Model-based Analysis of Equilibrium Structural Dynamics
Shimizu, Kentaro	Prediction of MoRFs Based on n-gram Convolutional Neural Network
Silva, Gabriel	DALIGNER Performance Evaluation on Intel Xeon Phi Architecture
T
Teixeira, Marcello	DALIGNER Performance Evaluation on Intel Xeon Phi Architecture
Theethira Poonacha, Kavery Nivana	Statistical Analysis of GLCM Texture Features and Microstructures in SEM Images of Crassostrea virginica Exposed to Atrazine
Tran, Quang	Understand Effective Coverage by Mapped Reads using Genome Repeat Complexity
W
Wickramasinghe, Nilmini	Predicting high-cost patients by Machine Learning: A case study in an Australian private hospital group
Wright, Gabriel	A New Look at Codon Usage and Protein Expression
Y
Yan, Changhui	An Enrichment Method For Mapping Ambiguous Reads To Reference Genome For NGS Analysis
Yan, Yan	Robust Fuzzy Cluster Ensemble on Cancer Gene Expression Data
Yue, Xingzhi	Colorectal Cancer Outcome Prediction from H&E Whole Slide Images using Machine Learning and Automatically Inferred Phenotype Profiles
Yurk, Valerie	Statistical Analysis of GLCM Texture Features and Microstructures in SEM Images of Crassostrea virginica Exposed to Atrazine
Z
Zaman, Ahmed Bin	Equipping Decoy Generation Algorithms for Template-free Protein Structure Prediction with Maps of the Protein Conformation Space
Zhou, Wenjin	Improving Classification with CNNs using Wavelet Pooling with Nesterov-Accelerated Adam
Ś
Śmieja, Jarosław	Petri nets and ODE as complementary tools in analysis of signaling pathways